Software published by the Co-clinical Imaging Research Resource is considered open source. Individuals who make use of the software/code acknowledge an agreement to the CIRP Resource Sharing Policy.
Automatic segmentation of PDX tumors
The DR2UNet for TNBC utility trains a network to segment PDX tumors. Software is available on GitHub: https://github.com/WU-C2IR2/DR2UNet-for-TNBC-PDX-Tumor-Segmentation
PET Hotel Session Splitter
This utility takes a Siemens microPET image session where a “hotel” containing multiple animals is scanned, and splits those scans into individual image sessions with Siemens associated file type for each assigned animal ID. A DICOM hotel splitter is available as well through the cloud-based pipeline. Please contact us to obtain the Python code for the hotel splitter.